Real Time QTL: a tool for the analysis of complex phenotypes
نویسندگان
چکیده
Functional genomics is as powerful as the diversity of phenotypes that are associated with the databases of DNA sequences and their expression patterns. A special bioinformatics challenge is to include detailed information in genomic databases about subtle phenoptypic differences that show continuous distribution in segregating populations. The objective of Real Time QTL (RTQ) is to present in silico the range of statistical outputs that describe the components of the genetic variation using tomato as a model organism.
منابع مشابه
Identification of genomic loci controlling phenologic and morphologic traits in barley (Hordeum vulgare L.) genotypes using association analysis
Association mapping is a technique with high resolution for QTL mapping based on linkage disequilibrium and has shown more promising for describing genetically complex traits. In addition, it is a powerful tool for describing complex agronomic traits and identifying alleles that can contribute to enhance the desired traits. In this study, whole genome association mapping was used in a set of 14...
متن کاملHTreeQA: Using Semi-Perfect Phylogeny Trees in Quantitative Trait Loci Study on Genotype Data
With the advances in high-throughput genotyping technology, the study of quantitative trait loci (QTL) has emerged as a promising tool to understand the genetic basis of complex traits. Methodology development for the study of QTL recently has attracted significant research attention. Local phylogeny-based methods have been demonstrated to be powerful tools for uncovering significant associatio...
متن کاملMapping and Expression Analysis of a Fusarium Head Blight Resistance Gene Candidate Pleiotropic Drug Resistance 5 (PDR5) in Wheat
Fusarium head blight (FHB) caused by Fusarium graminearum is a serious disease of wheat (Triticum aestivum L.), through which grain quality losses are induced by fungal trichotecene mycotoxins such as deoxynivalenol (DON). A class of plasma membrane localized ABC transporter proteins related to the yeast PDR5 (pleiotropic drug resistance5) efflux pump seems to be responsible for partial resista...
متن کاملReal-time damage detection of bridges using adaptive time-frequency analysis and ANN
Although traditional signal-based structural health monitoring algorithms have been successfully employed for small structures, their application for large and complex bridges has been challenging due to non-stationary signal characteristics with a high level of noise. In this paper, a promising damage detection algorithm is proposed by incorporation of adaptive signal processing and Artificial...
متن کاملارزیابی صحت پیشبینی ژنومی در معماریهای مختلف ژنومی صفات کمی و آستانهای با جانهی دادههای ژنومی شبیهسازیشده، توسط روش جنگل تصادفی
Genomic selection is a promising challenge for discovering genetic variants influencing quantitative and threshold traits for improving the genetic gain and accuracy of genomic prediction in animal breeding. Since a proportion of genotypes are generally uncalled, therefore, prediction of genomic accuracy requires imputation of missing genotypes. The objectives of this study were (1) to quantify...
متن کامل